GenBank/kmer_V2a
Protein k-mer graphs, from GenBank. Graph V2a
| Name |
kmer_V2a |
| Group |
GenBank |
| Matrix ID |
2809 |
|
Num Rows
|
55,042,369 |
|
Num Cols
|
55,042,369 |
|
Nonzeros
|
117,217,600 |
|
Pattern Entries
|
117,217,600 |
|
Kind
|
Undirected Graph |
|
Symmetric
|
Yes |
|
Date
|
2015 |
|
Author
|
GenBank |
|
Editor
|
MIT |
| Structural Rank |
|
| Structural Rank Full |
|
|
Num Dmperm Blocks
|
|
|
Strongly Connect Components
|
15,343 |
|
Num Explicit Zeros
|
0 |
|
Pattern Symmetry
|
100% |
|
Numeric Symmetry
|
100% |
|
Cholesky Candidate
|
no |
|
Positive Definite
|
no |
|
Type
|
binary |
| Download |
MATLAB
Rutherford Boeing
Matrix Market
|
| Notes |
Protein k-mer graphs generated using data from GenBank
https://www.ncbi.nlm.nih.gov/genbank/ are available below.
Nodes of the graph represent segments of amino acids.
Protein k-mer graphs
Name Description
A2a.tsv Graph 1 Num. vertices : 170728175 Edge count : 360585172
P1a.tsv Graph 2 Num. vertices : 139353211 Edge count : 297829984
U1a.tsv Graph 3 Nun. vertices : 67716231 Edge count : 138778562
V1r.tsv Graph 4 Num. vertices : 214005017 Edge count : 465410904
V2a.tsv Graph 5 Num. vertices : 55042369 Edge count : 117217600
From the 2018 GraphChallenge, https://graphchallenge.mit.edu.
Imported into the SuiteSparse Matrix Collection as "GenBank/kmer_*"
where "*" is the 3-letter name above, on July 2018.
|
