Group GenBank

Group Description
Protein k-mer graphs generated using data from GenBank
https://www.ncbi.nlm.nih.gov/genbank/ are available below.
Nodes of the graph represent segments of amino acids.

Protein k-mer graphs
Name       Description
A2a.tsv    Graph 1 Num. vertices : 170728175 Edge count : 360585172
P1a.tsv    Graph 2 Num. vertices : 139353211 Edge count : 297829984
U1a.tsv    Graph 3 Nun. vertices :  67716231 Edge count : 138778562
V1r.tsv    Graph 4 Num. vertices : 214005017 Edge count : 465410904
V2a.tsv    Graph 5 Num. vertices :  55042369 Edge count : 117217600

From the 2018 GraphChallenge, https://graphchallenge.mit.edu.
Imported into the SuiteSparse Matrix Collection as "GenBank/kmer_*"
where "*" is the 3-letter name above, on July 2018.
Displaying all 5 matrices
Id Name Group Rows Cols Nonzeros Kind Date Download File
2805 kmer_A2a GenBank 170,728,175 170,728,175 360,585,172 Undirected Graph 2015 MATLAB Rutherford Boeing Matrix Market
2806 kmer_P1a GenBank 139,353,211 139,353,211 297,829,984 Undirected Graph 2015 MATLAB Rutherford Boeing Matrix Market
2807 kmer_U1a GenBank 67,716,231 67,716,231 138,778,562 Undirected Graph 2015 MATLAB Rutherford Boeing Matrix Market
2808 kmer_V1r GenBank 214,005,017 214,005,017 465,410,904 Undirected Graph 2015 MATLAB Rutherford Boeing Matrix Market
2809 kmer_V2a GenBank 55,042,369 55,042,369 117,217,600 Undirected Graph 2015 MATLAB Rutherford Boeing Matrix Market